B C, D, E, F and G by three different programs, then the results from the three programs for each probe were compared against each other (See Supplementary Figure 1). If agreement was reached among three programs, then the CNV for these probes (Probe D and E) were confirmed and would be used in the following analysis. If there was disagreement among the three programs, then a missing value was assigned to these probes (Probe B, C, and F).
