As a companion feature, SEQMINER also supports annotating and querying VCF files of sequence variant genotype calls. To our knowledge, there is one R package VariantAnnotation that supports annotating and retrieving sequence variants from VCF/BCF files. VariantAnnotation relies on a variety of the Bioconductor packages to query and annotate VCF files. The package, however, was not designed to annotate and query summary association statistics.
