paperKB
coga / coga-kb
Help
Sign in

Chunk #12 — Methods — Genotyping and genotype grouping

Source
Association between dopaminergic polymorphisms and borderline personality traits among at-risk young adults and psychiatric inpatients.
Embedded
yes

Text

Non-invasive DNA sampling was applied, and DNA was isolated from buccal cells using the DNA-purification kit obtained from Gentra (Minneapolis, US). Genotyping procedures for the DRD2 TaqIA (rs1800497), TaqIB (rs1079597), TaqID (rs1800498), and DAT1 40 bp VNTR in the 3' untranslated region were carried out using published protocols [41-44]. Whereas VNTR genotyping methods of the DRD4 48 bp VNTR in exon III and 120 bp duplication in the promoter region, and the allele-specific amplifications of the DRD4 -616 C/G (rs747302), -521 C/T (rs1800955) and COMT Val158Met (rs4680) were developed and optimized in our laboratory [45-47]. The genotyping accuracy was checked by parallel genotyping of two independent DNA samples per person, and by calculating chi-square tests for deviation from the Hardy-Weinberg equilibrium using Knud Christensen's program [48]. Except for the -616 C/G SNP in the Hungarian psychiatric sample, no significant deviations from the Hardy-Weinberg equilibrium were detected in either populations. We assume that the slight deviation from the equilibrium (χ2 = 4.099, df = 1, p = 0.043) in the Hungarian patient sample originates from possible association of the -616 C/G