In a final step, for each of these 37 phenotypes, and for each Repository cohort, we ran a multivariate MTAG analysis on the target phenotype together with its supplementary phenotypes, using the version of the target phenotype and each supplementary phenotype for which the cohort is listed in the column “Repository Datasets Sumstats are Used For” in Supplementary Table 8. (In some cases, the same version of the target phenotype and each supplementary phenotype were used for more than one cohort; in those cases, we ran the MTAG analysis only once for that group of cohorts.)
