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Chunk #52 — Findings — Performance comparisons

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Second-generation PLINK: rising to the challenge of larger and richer datasets.
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In the following tables, running times are collected from seven machines operating on three datasets. “Mac-2” denotes a MacBook Pro with a 2.8 Ghz Intel Core 2 Duo processor and 4GB RAM running OS X 10.6.8.“Mac-12” denotes a Mac Pro with two 2.93 Ghz Intel 6-core Xeon processors and 64GB RAM running OS X 10.6.8.“Linux32-2” denotes a machine with a 2.4 Ghz Intel Core 2 Duo E6600 processor and 1GB RAM running 32-bit Ubuntu Linux.“Linux32-8” denotes a machine with a 3.4 Ghz Intel Core i7-3770 processor (8 cores) and 8GB RAM running 32-bit Ubuntu Linux.“Linux64-512” denotes a machine with sixty-four AMD 8-core Opteron 6282 SE processors and 512GB RAM running 64-bit Linux.“Win32-2” denotes a laptop with a 2.4 Ghz Intel Core i5-2430 M processor (2 cores) and 4GB RAM running 32-bit Windows 7 SP1.“Win64-2” denotes a machine with a 2.3 Ghz Intel Celeron G1610T processor (2 cores) and 8GB RAM running 64-bit Windows 8.“synth1” refers to a 1000 sample, 100000 variant synthetic dataset generated with HAPGEN2 [37], while “synth1p” refers to the same dataset after one round of –indep-pairwise 50