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Chunk #119 — Methods — Comparison with SMR

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Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics.
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In between the two extremes, the right distribution must be computed using numerical methods. When we look at the empirical distribution of the SMR statistic’s p-value against the GWAS and eQTL (top eQTL for the gene) p-values, we find the ceiling of the SMR statistic is maintained as shown in Fig. 5e, f.