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Chunk #46 — STAR★METHODS — METHOD DETAILS — FISH probes

Source
Transcriptional and anatomical diversity of medium spiny neurons in the primate striatum.
Embedded
yes

Text

We ordered custom FISH probes from ACD to validate MSN subtypes as follows: DRD1 (ACD #549041, a 20ZZ probe targeting 1335-2279 of NM_001206975.1), DRD2 (ACD #549031-C2, a 20ZZ probe targeting 232-1470 of XM_001085571.3), RXFP1 (ACD #801121-C2, a 20ZZ probe targeting 1508-2592 of XM_001096574.4), CPNE4 (ACD #801111-C3, a 20ZZ probe targeting of 2-943 of XM_028843706.1), KCNIP1 (ACD #889143-C3, a 20ZZ probe targeting 283-1626 of XM_015141392.2), KCNT1 (ACD #881571-C3, a 20ZZ probe targeting 964-1906 of XM_015116381.2), BACH2 (ACD #898961-C3, a 20ZZ probe targeting 927-2260 of XM_028847343.1), KHDRBS3 (ACD #881591-C3, a 20ZZ probe targeting 494-1493 of XM_028852934.1), STXBP6 (ACD #881611-C2, a 20ZZ probe targeting 2-1077 of NM_001260925.1), SEMA3E (ACD #879971-C2, a 20ZZ probe targeting 905-1889 of XM_028846126.1), GDA (ACD #881601-C2, a 20ZZ probe targeting 355-1373 of XM_015117899.2), GREB1L (ACD #898991-C3, a 20ZZ probe targeting 784-1732 of XM_015121640.2), ARHGAP6 (ACD #898981-C3, a 20ZZ probe targeting 2516-3463 of XM_001094565.3), TAC3 (ACD #520901-C3, a 17 ZZ design and targets 2- 768 bp of XM_001115535.2), and OPRK1 (ACD #518931, a 20 ZZ probe and targets 91–1392 bp of NM_001321097.1).