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Chunk #1 — RESEARCH DESIGN AND METHODS — SNP genotyping.

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Large copy-number variations are enriched in cases with moderate to extreme obesity.
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DNA was extracted from whole blood or lymphoblastoid cell lines using a high-salt method and genotyped on the Illumina HumanHap550 SNP arrays (Illumina, San Diego, CA). Standard Illumina data normalization procedures and canonical genotype clustering files were used to process the genotyping signals. All case and control subjects passed call-rate (>95%) measures and were genetically inferred to be of European ancestry, based on multidimensional scaling analysis (supplementary Fig. 1 in the online appendix, available at http://diabetes.diabetesjournals.org/cgi/content/full/db10-0192/DC1).