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Chunk #9 — Materials And Methods — Genotyping of the discovery dataset

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A genome-wide association study of autism reveals a common novel risk locus at 5p14.1.
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The above protocol is automated using the Tecan EVO-1 to further enhance the efficiency and consistency of the assay. Samples are processed in batches of 48 at a time. The same Quality Control DNA sample is repeated during each run to ensure reproducibility of results between runs. Data is extracted by the Illumina ® Beadstudio software from data files created by the Illumina BeadArray reader. Samples and markers with call rates below 95% were excluded from analysis and a GenCall cutoff score of 0.15 was used for all Infinium II ® products.