Instrument generated. Our GWAS of lifetime smoking identified 126 independent, genome-wide significant SNPs (see Fig. 1 and online Supplementary Table S1). A standard deviation increase in the lifetime smoking score is equivalent to an individual smoking 20 cigarettes a day for 15 years and stopping 17 years ago or an individual smoking 60 cigarettes a day for 13 years and stopping 22 years ago. We validated our instrument in an independent sample and using positive control outcomes of lung cancer, coronary heart disease and hypomethylation at the aryl-hydrocarbon receptor repressor site cg05575921 because smoking has been robustly shown to predict these outcomes (WHO, 2011; Zeilinger et al., 2013). For further details of these validations see the online Supplementary Note.