Chunk #38 — Materials and Methods — Utilizing Expression Information in GWAS

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Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS.

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We also examined enrichment for eQTLs in the Crohn's disease data by ordering the SNPs showing association to Crohn's, and examined the proportion of SNPs with eQTL scores >3, >2, and >1 among the top 1000 SNPs for Crohn's disease (Figure 3).