In addition to the rat data, we assembled a list of differentially expressed genes from several studies. Gene expression data from human brain regions was obtained from the GTEx portal (version V7; Lonsdale et al., 2013) as median number of transcripts per million (TPM; normalized to gene length). Single tissue eQTL (expression quantitative trait loci) data from GTEx was used to identify eQTLs in EBV-transformed-lymphocytes (LCLs). Gene expression data from postmortem human brain tissues of AD vs. controls were obtained from both microarray and RNAseq (Farris, Harris, & Ponomarev, 2015; Flatscher-Bader, Harrison, Matsumoto, & Wilce, 2010; Flatscher-Bader et al., 2005; Iwamoto et al., 2004; Kryger & Wilce, 2010; Lewohl et al., 2000; Liu et al., 2004; Liu et al., 2006; Liu, Lewohl, Harris, Dodd, & Mayfield, 2007; Mayfield et al., 2002; McClintick et al., 2013; Ponomarev, Wang, Zhang, Harris, & Mayfield, 2012) and matched by gene symbol to our gene expression results.
