We next determined whether our database can perform a detailed analysis of the personal genome of a sequenced individual. We examined the cell line GM12878, a European female, which has been deeply sequenced as part of the 1000 Genomes Project and is included in the Complete Genomics samples. This individual is also a Tier 1 cell line of the ENCODE Project allowing for verification of the annotation of its genome. A diploid map of this individual's genome has recently been generated, and it has been mapped with allele-specific expression and allele-specific binding (Rozowsky et al. 2011).
