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Chunk #9 — 2 The user perspective — 2.2 Coordinated analysis of multiple samples

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Orchestrating high-throughput genomic analysis with Bioconductor.
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To facilitate the analysis of experiments and studies with multiple samples, Bioconductor defines the SummarizedExperiment class. The computed summaries for the ranges are compiled into a rectangular array whose rows correspond to the ranges and whose columns correspond to the different samples (Fig. 2). For a typical experiment, there can be tens of thousands to millions of ranges and from a handful to hundreds of samples. The array elements do not need to be single numbers: the summaries can be multivariate.