late 2013 or early 2014. Beginning with this new release, the numeric portion of the UCSC human assembly version name will match the Genome Reference Consortium version number to reduce confusion. Table 1.New and updated genome assemblies added to the Genome Browser since September 2012Common nameScientific nameSequencing centerUCSC IDSeq. ctr IDPrimates BaboonPapio hamadryasBaylor College of Medicine HGSCpapHam1Pham_1.0 BaboonPapio anubisBaylor College of Medicine HGSCpapAnu2Panu_2.0 BushbabyOtolemur garnettiiBroad InstituteotoGar3OtoGar3 ChimpanzeePan troglodytesChimpanzee Sequencing and Analysis ConsortiumpanTro4Build 2.1.4 GibbonNomascus leucogenysGibbon Genome Sequencing ConsortiumnomLeu2Nleu1.1nomLeu3Nleu3.0 Mouse lemurMicrocebus murinusBroad InstitutemicMur1MicMur1.0 Rhesus macaqueMacaca mulattaBeijing Genomics InstituterheMac3CR_1.0 Squirrel monkeySaimiri boliviensisBroad InstitutesaiBol1SaiBol1.0 TarsierTarsius syrichtaBroad InstitutetarSyr1Tarsyr1.0Other mammals AlpacaVicugna pacosBroad InstitutevicPac1VicPac1.0vicPac2VicPac2.0 ArmadilloDasypus novemcinctusBaylor College of Medicine HGSCdasNov3DasNov3 CatFelis catusInternational Cat Genome Sequencing ConsortiumfelCat5Felis_catus-6.2 DolphinTursiops truncatusBaylor College of Medicine HGSCturTru2Ttru_1.4 FerretMustela putorius furoFerret Genome Sequencing ConsortiummusFur1MusPutFur1.0 HedgehogErinaceus europaeusBroad InstituteeriEur1Draft_v1 Kangaroo ratDipodomys ordiiBaylor College of Medicine HGSC, Broad InstitutedipOrd1DipOrd1.0 ManateeTrichechus manatus latirostrisBroad InstitutetriMan1TriManLat1.0 MegabatPteropus vampyrusBroad InstitutepteVam1PteVap1.0 Naked mole ratHeterocephalus glaberBroad InstitutehetGla2HetGla_female_1.0 PigSus scrofaSwine Genome Sequencing ConsortiumsusScr3Sscrofa10.2 PikaOchotona princepsBroad InstituteochPri2OchPri2 Rock hyraxProcavia capensisBaylor College of Medicine HGSCproCap1Procap1.0 ShrewSorex araneusBroad InstitutesorAra1SorAra1.0 SlothCholoepus hoffmanniBroad InstitutechoHof1ChoHof1.0 Southern white rhinocerosCeratotherium simum simumBroad InstitutecerSim1cerSimSim1.0 SquirrelSpermophilus tridecemlineatusBroad InstitutespeTri2SpeTri2.0 Tree shrewTupaia belangeriBroad InstitutetupBel1Tupbel1.0Other vertebrates American alligatorAlligator mississippiensisInt’l Crocodilian Genomes Working GroupallMis1allMis0.2 Atlantic codGadus morhuaGenofiskgadMor1GadMor_May2010 BudgerigarMelopsittacus undulatusGenome Institute at Wash. Univ. St. LouismelUnd1v6.3 CoelacanthLatimeria
