paperKB
coga / coga-kb
Help
Sign in

Chunk #112 — Materials and methods — Composite null hypotheses

Source
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Embedded
yes

Text

Note that while a zero-centered prior on LFCs is consistent with testing the null hypothesis of small LFCs, it should not be used when testing the null hypothesis of large LFCs, because the prior would then favor the alternative hypothesis. DESeq2 requires that no prior has been used when testing the null hypothesis of large LFCs, so that the data alone must provide evidence against the null hypothesis.