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Chunk #19 — Results — Data-driven gene set analysis

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Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.
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analysis. Indeed, if we repeat the data-driven comprehensive gene set analysis while adjusting for the six independently associated CNS gene sets, the only surviving enrichment term is the LoF-intolerant genes. These results are consistent with those from CNV analysis30 in that they do not support annotations other than those related to CNS function and demonstrate that hypothesis-based analysis to maximize power does not substantially impact the overall pattern of results.