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Chunk #12 — Methods — Polygenic profiling

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Polygenic risk for alcohol dependence associates with alcohol consumption, cognitive function and social deprivation in a population-based cohort.
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The PGRS presented throughout the manuscript were created using all autosomal SNPs. However, as several known alcohol metabolism genes are located on chromosome 4q23 (ADH4, ADH5, ADH6, ADH1A, ADH1B, ADH1C), a separate PGRS was calculated with chromosome 4 SNPs excluded to provide an estimate of polygenic risk for alcohol dependence that was independent of the SNPs within these loci.