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Chunk #37 — Review — Chromatin accessibility high-throughput sequence data analysis — Detection of enriched regions — DNase-seq data

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Chromatin accessibility: a window into the genome.
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A recent comparison of the above four peak callers demonstrated that F-Seq and ZINBA have the highest and lowest sensitivity respectively [135]. F-Seq has also been shown to perform better than window-clustering approaches in a separate study [129], and its accuracy can be significantly increased by reducing the peak signal threshold setting from the default value of four to a value between 2 and 3 [135].