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Chunk #52 — STAR★METHODS — QUANTIFICATION AND STATISTICAL ANALYSIS — Polygenic analysis — Out of sample prediction

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Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies.
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The PGS were evaluated in each cohort. Logistic regression of case/control status on PGS standardised in each cohort so that the controls had PGS with mean zero and standard deviation of 1. Genetic principal components were included as covariates, but these explained very little variation. The performance of prediction in each target cohort was quantified by the following metrics: