multi-tissue analysis of gene expression was validated at the system level for 33 out of 34 phenotypes (Figure 3a, Table S5), and the top enrichment of a tissue or cell type shared between GTEx and EN-TEx was validated at the tissue/cell-type level for 13 out of 20 phenotypes, rising to 16 with a more lenient definition (Table S5, Online Methods). In many instances, the analysis of chromatin data detected more enrichments, larger enrichments, and/or enrichments at higher significance levels than the analysis of gene expression data, though this was not always the case (Figures S4-S5, Table S7, Online Methods). The enrichment correlations in this analysis showed a similar pattern to the gene expression analysis above (Figure S6).
