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Chunk #45 — STAR★METHODS — QUANTIFICATION AND STATISTICAL ANALYSIS — Post-imputation quality control procedures

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Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies.
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least 5% was required; for larger studies, we required a minimum effective sample size (Neff) of 50, calculated as Neff = 2 × MAF × (1-MAF) × N × Info, where ‘Info’ represents the imputation quality score, ‘MAF’ is the minor allele frequency and ‘N’ is the actual sample size.