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Chunk #16 — METHODS — NUMBER OF DIMENSIONS

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Discovering genetic ancestry using spectral graph theory.
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yes

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When using the eigenmap based on ϒϒt a formal test for the number of significant dimensions can be based on the theoretical results concerning the Tracy-Widom distribution of eigenvalues of a covariance matrix [Johnstone, 2001; Patterson et al., 2006]. Tracy-Widom theory does not extend to the eigenvalues of the graph Laplacian. Instead we introduce a different approach, known as the eigengap heuristic, based on the difference in magnitude between successive eigenvalues.