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Chunk #37 — Discussion

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Causal associations between risk factors and common diseases inferred from GWAS summary data.
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pressures, and hypertensive disease) (Supplementary Fig. 18). Note that the test-statistics decreased slightly after filtering SNPs by HEIDI-outlier (Supplementary Fig. 22), indicating that the result from the analysis with HEIDI-outlier filtering is more conservative. Second, the estimates of bxy were highly consistent with the slopes from Egger regression that are considered to be free of confounding from pleiotropy13 (MR-Egger) (Supplementary Fig. 23). Note that we used GSMR for the main analyses because in comparison with MR-Egger and inverse-variance weighted method (MR-IVW, equivalent to MR-Egger without intercept)12, GSMR gains power by taking the sampling variation of \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\hat b_{zx}$$\end{document}b^zx and \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\hat b_{zy}$$\end{document}b^zy into account as demonstrated in simulations (Supplementary Fig. 3), and GSMR also has the advantage of accounting for LD among SNPs not removed by the clumping analysis, a property that is important especially when the number of instruments is large. Third, the intercepts from MR-Egger (a significant deviation of the intercept from 0 is evidence for the presence of pleiotropy) were very small relative to the slopes (Supplementary Fig. 24), and there was no inflation in the test-statistics (Supplementary Fig. 24b, c),