Chunk #71 — Materials and methods — Contrasts

Source

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Embedded

yes

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where \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document} $\vec {c}$ \end{document}c→ represents a numeric contrast, e.g., 1 and −1 specifying the numerator and denominator of a simple two-level contrast, and \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document} $\Sigma _{i} = \text {Cov}(\vec \beta _{i})$ \end{document}Σi=Cov(β→i), defined below.