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Chunk #12 — Variant calling and Quality Control filtering of exome sequencing datasets

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Exome sequencing and the genetic basis of complex traits.
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Despite stringent QC, genotyping and sequencing errors are still present. Unfortunately, when stratifying variants based on putative functional consequences, the class of variation that is annotated to be most deleterious is also more heavily enriched for errors56. This underscores the importance of rigorous quality control.