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Chunk #45 — Methods — Cellular differentiation assay (‘Cellomics’) — Processing of images on the Cellomics instrument

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Common genetic variation drives molecular heterogeneity in human iPSCs.
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To quantify Cellomics phenotypes, we fit a Gamma mixture model to the Cellomics raw intensities (Supplementary Information). Briefly, this model was fit to primary wells as well as background wells (Extended Data Fig. 1), thereby estimating both the proportion of responding cells as well as the overall intensity (expression) of the corresponding cells.