For help on the programs and websites used in this protocol, refer to the relevant websites: GoldSurfer2 – http://www.well.ox.ac.uk/gs2/tutorial.htmlHaploView - http://www.broad.mit.edu/haploview/user-manualUCSC - http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.htmlHapMap browser - http://www.hapmap.org/gbrowse_help.htmlEstimate-coverage.pl - http://www.well.ox.ac.uk/~carl/gwa/cost-efficiency/
