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Chunk #31 — Methods — Computing pPS

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Ancestry deconvolution and partial polygenic score can improve susceptibility predictions in recently admixed individuals.
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We formulated a statistic that estimates the total Polygenic Score (PS) using only a part of the genome: a “partial Polygenic Score” (pPS). Its desired key properties are: (A) being unbiased with respect to the fraction of genome used to compute it and (B) being robust to fluctuations in variance due to the different regions of the genome used to compute pPS.