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Chunk #20 — Material and Methods — Statistical analyses — GWAS analyses

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A Genome-Wide Association Study of a Biomarker of Nicotine Metabolism.
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Prior to the analyses NMR was transformed using rank transformation to obtain a normal distribution. The transformation was employed with the rntransform() function available in the R statistical software package GenABEL [42], which replaces the median NMR value with the value zero and transforms the rest of the values so that they are N(0,1)-normally distributed around this value. NMR distributions before and after the transformation are shown in S1 Fig.