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Chunk #3 — Introduction

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Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip.
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Here we focus instead on the power of particular chips to detect causal variants of different effect sizes, and the way in which this varies with study size and/or study cost and when using genotype imputation methods. Although coverage is straightforward to estimate, power is a complicated function of the set of SNPs on the chip, effect size, and sample size, and can only be assessed by simulation.