Chunk #65 — Results — Scenario B — Accuracy comparison on full dataset

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A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.

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Across these imputation runs, the best-guess discordance at masked SNPs in U1 was 2.87% for IMPUTE v2 and 3.60% for BEAGLE – i.e., the discordance for IMPUTE v2 was 20% smaller than the discordance for BEAGLE.