The assay data used in this publication are listed in the Biostudies archive (https://www.ebi.ac.uk/biostudies/studies) with accession identifier S-BSMS5. All data can be accessed via the HipSci data portal (http://www.hipsci.org), which references to EMBL-EBI archives that are used to store the HipSci data. Managed access data from all assays are accessible via EGA under the study EGAS00001001465. Open access genotyping array data and RNA-seq data are available from ENA under the studies PRJEB11752 and PRJEB7388. Open access gene expression array data are available in the ArrayExpress database under accession number E-MTAB-4057. The mass spectrometry proteomics data have been deposited to ProteomeXchange via the PRIDE repository with the dataset identifiers PXD003903 and PXD005506. Data types from specialized assays for which none of the existing archives are appropriate are available from the HipSci FTP site (ftp://ftp.hipsci.ebi.ac.uk/vol1/ftp). Intermediate result files for this study, such as processed gene expression levels, can be found at: ftp://ftp.hipsci.ebi.ac.uk/vol1/ftp/data. For full details see Supplementary Information.
