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Chunk #50 — Methods — Statistical analyses — Leave-one phenotype out GWAS

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Genome-wide association study implicates CHRNA2 in cannabis use disorder.
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In the GWAS of CUD we corrected, by covariates, for five major psychiatric disorders analysed in iPSYCH (Supplementary Table 1). However, in order to further evaluate the potential impact on the association signal of the index variant from the psychiatric phenotypes, sensitivity analyses were performed where one phenotype at a time was excluded from the association analysis. The phenotypes evaluated were schizophrenia, bipolar disorder, major depressive disorder, attention-deficit hyper activity disorder, autism and individuals not having any of the five diagnoses. GWASs were performed as previously described excluding one of the six phenotypes one at a time (sample size for number of cases and controls is shown in Supplementary Table 1).