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Chunk #36 — Methods — Marker-based quality control

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The UK Biobank resource with deep phenotyping and genomic data.
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yes

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using a subset of 463,844 individuals with estimated European ancestry. We identified these individuals from the genotype data before conducting any quality control by projecting all the UK Biobank samples on to the two major principal components of four 1000 Genomes populations (CEU, YRI, CHB and JPT)25. We then selected samples with principal component scores falling in the neighbourhood of the CEU cluster (Supplementary Information).