paperKB
coga / coga-kb
Help
Sign in

Chunk #207 — VII. Classes of genes that are identified in multiple GWA samples for multiple phenotypes: Focus on cell adhesion related genes

Source
Molecular genetics of addiction and related heritable phenotypes: genome-wide association approaches identify "connectivity constellation" and drug target genes with pleiotropic effects.
Embedded
yes

Text

We initially identified NrCAM based on convergence between data from genome wide association and studies of drug regulated gene expression [226]. Our initial 1.5 k SNP genome wide association study identified a reproducibly-nominally-positive SNP that was mapped roughly to the region that contained NrCAM as well as other genes. Follow up studies provided confirmatory observations: 11 of 37 tested mid-chromosome seven simple sequence length polymorphisms (SSLPs) display allele frequency differences between abusers and controls in NIDA European- and/or African-American samples that reach nominal significance. Three displayed nominally-significant differences in both populations; fewer than one would have been expected by chance. These nominally-significant results encompassed markers located between 98–103 Mb of chromosome 7.