Concordance was also tested for the same nine European PGC-SCZ cohorts, across 12 neurological GTEx prediction databases. All correlations were significant (rho > 0.95, p < 2.2 × 10−16). There was a significant correlation between p-value concordance and case-control ratio (rho = 0.37, p = 7.606 × 10−15). 114 genes had discordant p-values between the two methods and were excluded from future analyses.
