The Icelandic population arose from the admixture of Norse and Gaelic ancestors. To represent the ancestral populations, 445 samples from Scotland were genotyped on the Illumina 300 K chip, and 250 samples from Norway were genotyped on the Affymetrix 6.0 chip. The appropriate informed consent was obtained for all sample donors. Illumina 300 K genotyping was conducted by deCODE Genetics, and Affymetrix 6.0 genotyping was conducted by Expression Analysis on behalf of Ulleval University Hospital in Oslo. SNPs with >5% missing data in either Norway or Scotland were removed, leaving 79,641 autosomal SNPs (that were genotyped on both chips) in the merged data set of samples from Iceland, Norway and Scotland.