As with any quantifiable behavioral or physical parameter, individuals can be categorized into groups based on genotype. Brain images of individuals in the different genotype groups can then be averaged and compared statistically. In adult populations, one of the most frequently studied genes has been apolipoprotein E (apoE), which modulates risk for Alzheimer’s disease. Carriers of the 4 allele of apoE have increased risk, whereas carriers of the 2 allele are possibly at decreased risk. To explore whether apoE alleles have distinct neuroanatomic signatures identifiable in childhood and adolescence, we examined 529 scans from 239 healthy subjects aged 4–20 years (Shaw et al., 2007c). Although there were no significant IQ-genotype interactions, there was a stepwise effect on cortical thickness in the entorhinal and right hippocampal regions, with the 4 group exhibiting the thinnest, the 3 homozygotes in the middle range, and the 2 group the thickest. These data suggest that pediatric assessments might one day be informative for adult-onset disorders.