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Chunk #6 — RESULTS

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Genome-wide efficient mixed-model analysis for association studies.
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To verify the correctness of our algorithm and implementation we first validate it by comparing p values calculated by GEMMA with those from EMMA on a subset of SNPs from both data sets. For all SNPs examined the p values from the two methods match exactly (Wald test results shown in Figure 1a and 1b; Likelihood ratio test not shown).