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Chunk #14 — Discussion

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The effect of genome-wide association scan quality control on imputation outcome for common variants.
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imputation of low frequency and rare variants based on emerging reference panels such as the 1000 genomes (http://www.1000genomes.org) and UK10k (http://www.uk10k.org) projects. In summary, our study demonstrates that imputation of common variants is generally very accurate and robust to GWAS QC, which is not a major factor affecting imputation outcome.