Chunk #36 — Results — Power comparison — Three out of three traits associated with the QTL (Figure 2C)

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A comparison of multivariate genome-wide association methods.

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Results for MAF = 0.25, 0.10, and 0.05 are shown in Tables S3-S5. As expected, power was similar for all MAF scenarios. Low MAF was not a problem for the methods, except for MultiPhen which experienced convergence problems of the underlying R function ‘polr’ when MAF was equal to or lower than 5%.