Chunk #10 — Methods

Source

Artifact due to differential error when cases and controls are imputed from different platforms.

Embedded

yes

Text

We ran a logistic regression for each of m SNPs, modeling the log-odds of being a “case” (Y = 1) as a linear function of the number of rare alleles at the locus. That is, for the ith SNP, i = 1,…,m, with Ai copies of the rare allele, we fit