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Chunk #61 — Methods (full – for online materials) — HeLa cells culturing and hMTR4 depletion

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An atlas of active enhancers across human cell types and tissues.
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HeLa cells were grown in DMEM medium supplemented with 10% fetal bovine serum at 37°C and 5% CO2. siRNA-mediated knockdown of either EGFP(control), and hMTR4 (SKIV2L2) were performed using 22 nM of siRNA and Lipofectamin2000 (Invitrogen) as transfecting agent. A second hit of 22 nM siRNA was given after 48 h. Cells were harvested an additional 48 h after the second hit, and protein depletion was verified by western blotting analysis as described elsewhere48. The following siRNA sequences were used: