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Chunk #83 — Materials and methods — Estimation of dispersions

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
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confirmed that the observed joint distribution of estimated dispersions and means is not compatible with a single, constant dispersion. Therefore, the parametrization (6) is a flexible and mildly conservative modeling choice: it is able to pick up dispersion-mean dependence if it is present, while it can lead to a minor loss of power in the low-count range due to a tendency to overestimate dispersion there.