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Chunk #57 — Methods — Mapping and enrichment analysis of ChIP-Seq reads

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.
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Following sequencing cluster imaging, base calling and mapping were conducted using the Illumina pipeline. Clonal reads were removed from the total mapped tags, retaining only the non-clonal unique tags that mapped to one location in the genome, where each sequence is represented once. Regions of tag enrichment were identified as described previously25.