paperKB
coga / coga-kb
Processing
Help
Sign in

Chunk #19 — Materials and methods — MVPA — Permutation test

Source
Atypical effective connectivity from the frontal cortex to striatum in alcohol use disorder.
Embedded
yes

Text

The final classification accuracy was assessed for statistical significance compared to the chance-level accuracy, and adjusted for multiple comparisons using a permutation test with 2000 iterations. First, the MVPA procedure was executed in a consistent manner with the previously described method, utilizing a linear SVM and employing the same feature selection process based on F scores. Specifically, 10% of ReHo features were selected at intervals of 10% from 10% to 100%. However, during every cross-validation iteration, the class labels were randomly permuted to produce ten classification accuracies; subsequently, the highest accuracy was selected. Second, the initial step was iterated 2000× to produce 2000 maximum accuracies for all permutation steps. From these accuracies, a null distribution of chance-level accuracies was established. Third, the P-value for each accuracy was calculated by comparing the ten classification accuracies obtained from actual labels with the null distribution. The resultant P-values were adjusted for FWE P < 0.05.