Chunk #38 — STAR★METHODS — METHOD DETAILS — Genome-wide association study meta-analysis — Genomic Quality Control: Principal Component Analysis (PCA) and Relatedness Checking

Source

Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies.

Embedded

yes

Text

In summary we retained between 219K and 1.7M autosomal SNPs and 2476 to 28780 chromosome X SNPs in each cohort. For a detailed list of excluded individuals and SNPs at various QC steps described above see (Table S2B).