Chunk #84 — Methods — Generation of CNV Calls and QC

Source

A genome-wide investigation of SNPs and CNVs in schizophrenia.

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yes

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Mb; chr11: 0–1.8 Mb; chr14: 18–23.6 Mb, 104.5–106.5 Mb; chr15: 17.0–21.100–100.3 Mb; chr16: 0–2.1 Mb, 31.8–36.0 Mb, 86.6–88.9 Mb; chr17:0–1 Mb, 76.5–78.8 Mb; chr18: 14–16 Mb, 75.5–76 Mb; chr19: 0–2.1 Mb, 25.7–28.3 Mb, 61.5–62.5 Mb; chr20: 25.7–28.3 Mb, 61.5–62.5 Mb; chr21:9.7–14.3 Mb; chr22:14.4–14.7 Mb, 20.5–21.8 Mb (centromeric and telomeric regions, some overlapping immunoglobin regions as above). We also removed CNVs that spanned centromeres by searching for those larger than 1 Mb with fewer than 50 SNPs and checking their genomic locations.