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Chunk #9 — MATERIALS AND METHODS — ROC curves and optimal biomarker combinations

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Classification and selection of biomarkers in genomic data using LASSO.
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To combine information across the high-dimensional vector of gene expression profiles, we consider linear combinations of the form β0TXi, i = 1, . . ., n. Without loss of generality, we will also assume that larger values of this linear combination corresponding to increasing likelihood of having g = 1. While the method can be easily extended to incorporate interactions between gene expression measurements, we focus on consideration of the main effects for purposes of exposition.